Man pages for nucim
Nucleome Imaging Toolbox

barplot_with_intervalBarplot with Intervals
barplot_with_interval_23Barplot with Intervals for two or three bars beside
classifyClassify DAPI
classify.folderClassify DAPI
classify.singleClassify DAPI
classify.tableCount classes in classified image
class.neighboursClass neighbourhood distribution
class.neighbours.folderclass.neighbours.folder
colors.in.classesCompute colors in classes distribution
colors.in.classes.folderCompute colors in classes distribution for folders
compute.distance2borderCompute distance to border of classes
dapimaskMask DAPI in kernel
dapimask.fileAutomatic DAPI mask segmentation for files
dapimask.folderAutomatic DAPI mask segmentation for folder
find.spots.fileDetects spots for one file
find.spots.folderDetects spots
heatmap7Heatmap colors for 7 classes
heatmap.colorHeatmap colors for n classes
nearestClassDistances.folderFind all distances to next neighbour of all classes for...
plot_classify.folderPlot barplot for classified images in a folder
plot_colors.in.classes.folderPlot for colors in classes distribution for folders
plot_nearestClassDistances.folderPlots all distances to next neighbour of all classes for...
splitchannelSplit RGB channels
splitchannelsSplit RGB images into channels and pixel size information
splitchannels.fileSplit channels into files and extracts size in microns
splitchannels.folderSplit RGB images into channels and pixel size information
spots.combinedFind spots using information from two channels
spots.combined.fileFind spots using information from two channels
spots.combined.folderFind spots using information from two channels for folder
t_colors.in.classes.folderTest for colors in classes distribution for folders
nucim documentation built on Oct. 9, 2018, 5:04 p.m.