Description Usage Arguments Value
View source: R/spots_combined.R
Find spots using information from two channels
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red |
image |
green |
image |
mask |
image mask |
size |
size of img in microns |
voxelsize |
size of voxel in microns |
thresh.offset |
Thresh offset used in EBImage::thresh() |
window |
Half width and height of the moving rectangular window. |
min.sum.intensity |
spots smaller than min.sum.intensity are ignored |
max.distance |
use only spots with distance to other color spot smaller than max.distance |
use.brightest |
Logical; use only brightest in max.distance? |
max.spots |
maximum of spots (per channel), only when use brightest=TRUE |
full.voxel |
Logical; output contains full voxel instead of rgb intensities |
RGB image with spots will be written to output folder
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