get_allele_hmm: Get an allele HMM
In numbat: Haplotype-Aware CNV Analysis from scRNA-Seq
get_allele_hmm R Documentation
Get an allele HMM
Description
Get an allele HMM
Usage
get_allele_hmm(pAD, DP, p_s, theta, gamma = 20)
Arguments
pAD
integer vector Paternal allele counts
DP
integer vector Total alelle counts
p_s
numeric vector Phase switch probabilities
theta
numeric Haplotype imbalance
gamma
numeric Overdispersion in the allele-specific expression
Value
HMM object
numbat documentation built on Nov. 5, 2025, 5:31 p.m.
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| get_allele_hmm | R Documentation |
Get an allele HMM
Description
Get an allele HMM
Usage
get_allele_hmm(pAD, DP, p_s, theta, gamma = 20)
Arguments
pAD |
integer vector Paternal allele counts |
DP |
integer vector Total alelle counts |
p_s |
numeric vector Phase switch probabilities |
theta |
numeric Haplotype imbalance |
gamma |
numeric Overdispersion in the allele-specific expression |
Value
HMM object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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