get_allele_hmm: Get an allele HMM

View source: R/hmm.R

get_allele_hmmR Documentation

Get an allele HMM

Description

Get an allele HMM

Usage

get_allele_hmm(pAD, DP, p_s, theta, gamma = 20)

Arguments

pAD

integer vector Paternal allele counts

DP

integer vector Total alelle counts

p_s

numeric vector Phase switch probabilities

theta

numeric Haplotype imbalance

gamma

numeric Overdispersion in the allele-specific expression

Value

HMM object


numbat documentation built on May 29, 2024, 1:29 a.m.