plot_mut_history: Plot mutational history

In numbat: Haplotype-Aware CNV Analysis from scRNA-Seq

Plot mutational history

Description

Plot mutational history

Usage

plot_mut_history(
  G,
  clone_post = NULL,
  edge_label_size = 4,
  node_label_size = 6,
  node_size = 10,
  arrow_size = 2,
  show_clone_size = TRUE,
  show_distance = TRUE,
  legend = TRUE,
  edge_label = TRUE,
  node_label = TRUE,
  horizontal = TRUE,
  pal = NULL
)

Arguments

G	igraph Mutation history graph
clone_post	dataframe Clone assignment posteriors
edge_label_size	numeric Size of edge label
node_label_size	numeric Size of node label
node_size	numeric Size of nodes
arrow_size	numeric Size of arrows
show_clone_size	logical Whether to show clone size
show_distance	logical Whether to show evolutionary distance between clones
legend	logical Whether to show legend
edge_label	logical Whether to label edges
node_label	logical Whether to label nodes
horizontal	logical Whether to use horizontal layout
pal	named vector Node colors

Value

ggplot object

Examples

p = plot_mut_history(mut_graph_example)

numbat documentation built on May 29, 2024, 1:29 a.m.