plot_sc_tree: Plot single-cell smoothed expression magnitude heatmap

In numbat: Haplotype-Aware CNV Analysis from scRNA-Seq

Plot single-cell smoothed expression magnitude heatmap

Description

Plot single-cell smoothed expression magnitude heatmap

Usage

plot_sc_tree(
  gtree,
  label_mut = TRUE,
  label_size = 3,
  dot_size = 2,
  branch_width = 0.5,
  tip = TRUE,
  tip_length = 0.5,
  pal_clone = NULL
)

Arguments

gtree	tbl_graph The single-cell phylogeny
label_mut	logical Whether to label mutations
label_size	numeric Size of mutation labels
dot_size	numeric Size of mutation nodes
branch_width	numeric Width of branches in tree
tip	logical Whether to plot tip point
tip_length	numeric Length of the tips
pal_clone	named vector Clone colors

Value

ggplot A single-cell phylogeny with mutation history labeled

Examples

p = plot_sc_tree(phylogeny_example)

numbat documentation built on May 29, 2024, 1:29 a.m.