retest_cnv: retest CNVs in a pseudobulk

In numbat: Haplotype-Aware CNV Analysis from scRNA-Seq

retest CNVs in a pseudobulk

Description

retest CNVs in a pseudobulk

Usage

retest_cnv(
  bulk,
  theta_min = 0.08,
  logphi_min = 0.25,
  gamma = 20,
  allele_only = FALSE,
  exclude_neu = TRUE
)

Arguments

bulk	pesudobulk dataframe
gamma	numeric Dispersion parameter for the Beta-Binomial allele model
allele_only	whether to retest only using allele data

Value

a dataframe of segments with CNV posterior information

numbat documentation built on May 29, 2024, 1:29 a.m.