smooth_expression: filtering, normalization and capping
In numbat: Haplotype-Aware CNV Analysis from scRNA-Seq
smooth_expression R Documentation
filtering, normalization and capping
Description
filtering, normalization and capping
Usage
smooth_expression(count_mat, lambdas_ref, gtf, window = 101, verbose = FALSE)
Arguments
count_mat
dgCMatrix Gene expression counts
lambdas_ref
matrix Reference expression profiles
gtf
dataframe Transcript gtf
Value
dataframe Log(x+1) transformed normalized expression values for single cells
numbat documentation built on May 29, 2024, 1:29 a.m.
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| smooth_expression | R Documentation |
filtering, normalization and capping
Description
filtering, normalization and capping
Usage
smooth_expression(count_mat, lambdas_ref, gtf, window = 101, verbose = FALSE)
Arguments
count_mat |
dgCMatrix Gene expression counts |
lambdas_ref |
matrix Reference expression profiles |
gtf |
dataframe Transcript gtf |
Value
dataframe Log(x+1) transformed normalized expression values for single cells
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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