plot.onemap_progeny_haplotypes_counts: Plot recombination breakpoints counts for each individual

In onemap: Construction of Genetic Maps in Experimental Crosses

Plot recombination breakpoints counts for each individual

Description

Plot recombination breakpoints counts for each individual

Usage

## S3 method for class 'onemap_progeny_haplotypes_counts'
plot(x, by_homolog = FALSE, n.graphics = NULL, ncol = NULL, ...)

Arguments

x	object of class onemap_progeny_haplotypes_counts
by_homolog	logical, if TRUE plots counts by homolog (two for each individuals), if FALSE plots total counts by individual
n.graphics	integer defining the number of graphics to be plotted, they separate the individuals in different plots
ncol	integer defining the number of columns in plot
...	currently ignored

Value

a ggplot graphic

Examples

data("onemap_example_out")
twopts <- rf_2pts(onemap_example_out)
lg1 <- make_seq(twopts, 1:5)
lg1.map <- map(lg1)
prog.haplo <- progeny_haplotypes(lg1.map, most_likely = TRUE)
plot(progeny_haplotypes_counts(prog.haplo))

onemap documentation built on Nov. 26, 2022, 9:05 a.m.