plot_genome_vs_cm: Draws a physical vs cM map
In onemap: Construction of Genetic Maps in Experimental Crosses
View source: R/plot_genome_vs_cm.R
plot_genome_vs_cm R Documentation
Draws a physical vs cM map
Description
Provides simple genetic to physical ggplot.
Usage
plot_genome_vs_cm(map.list, mapping_function = "kosambi", group.names = NULL)
Arguments
map.list
a map, i.e. an object of class sequence with a
predefined order, linkage phases, recombination fraction and likelihood;
also it could be a list of maps.
mapping_function
either "kosambi" or "haldane"
group.names
vector with group name for each sequence object in the map.list
Value
ggplot with cM on x-axis and physical position on y-axis
Author(s)
Jeekin Lau, jeekinlau@gmail.com
onemap documentation built on June 8, 2025, 1:55 p.m.
R Package Documentation
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View source: R/plot_genome_vs_cm.R
| plot_genome_vs_cm | R Documentation |
Draws a physical vs cM map
Description
Provides simple genetic to physical ggplot.
Usage
plot_genome_vs_cm(map.list, mapping_function = "kosambi", group.names = NULL)
Arguments
map.list |
a map, i.e. an object of class |
mapping_function |
either "kosambi" or "haldane" |
group.names |
vector with group name for each sequence object in the map.list |
Value
ggplot with cM on x-axis and physical position on y-axis
Author(s)
Jeekin Lau, jeekinlau@gmail.com
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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