progeny_haplotypes_counts: Plot number of breakpoints by individuals
In onemap: Construction of Genetic Maps in Experimental Crosses

progeny_haplotypes_counts

R Documentation

Plot number of breakpoints by individuals

Description

Generate graphic with the number of break points for each individual considering the most likely genotypes estimated by the HMM. Genotypes with same probability for two genotypes are removed. By now, only available for outcrossing and f2 intercross.

Usage

progeny_haplotypes_counts(x)

Arguments

`x`	object of class onemap_progeny_haplotypes

Value

a data.frame with columns individuals ID (ind), group ID (grp), homolog (homolog) and counts of breakpoints

Examples


data("onemap_example_out")
twopts <- rf_2pts(onemap_example_out)
lg1 <- make_seq(twopts, 1:5)
lg1.map <- map(lg1)
progeny_haplotypes_counts(progeny_haplotypes(lg1.map, most_likely = TRUE))

onemap documentation built on Nov. 26, 2022, 9:05 a.m.