remove_inds: Remove individuals from the onemap object

View source: R/utils.R

remove_indsR Documentation

Remove individuals from the onemap object

Description

Remove individuals from the onemap object

Usage

remove_inds(onemap.obj, rm.ind)

Arguments

onemap.obj

object of class onemap

rm.ind

vector of characters with individuals names

Value

An object of class onemap without the selected individuals, i.e., a list with the following components:

geno

a matrix with integers indicating the genotypes read for each marker. Each column contains data for a marker and each row represents an individual.

n.ind

number of individuals.

n.mar

number of markers.

segr.type

a vector with the segregation type of each marker, as strings.

segr.type.num

a vector with the segregation type of each marker, represented in a simplified manner as integers, i.e. 1 corresponds to markers of type "A"; 2 corresponds to markers of type "B1.5"; 3 corresponds to markers of type "B2.6"; 4 corresponds to markers of type "B3.7"; 5 corresponds to markers of type "C.8"; 6 corresponds to markers of type "D1" and 7 corresponds to markers of type "D2". Markers for F2 intercrosses are coded as 1; all other crosses are left as NA.

input

the name of the input file.

n.phe

number of phenotypes.

pheno

a matrix with phenotypic values. Each column contains data for a trait and each row represents an individual.

Author(s)

Cristiane Taniguti, chtaniguti@tamu.edu


onemap documentation built on Nov. 26, 2022, 9:05 a.m.