vcf_example_out: Data generated from VCF file with biallelic markers from a...
In onemap: Construction of Genetic Maps in Experimental Crosses
vcf_example_out R Documentation
Data generated from VCF file with biallelic markers from a full-sib family derived from two outbred parents
Description
Simulated biallelic data set for an outcross, i.e., an F1 population obtained by
crossing two non-homozygous parents.
Usage
data(vcf_example_out)
Format
An object of class onemap.
Details
A total of 92 F1 individuals were genotyped with 27 markers. The data
was generated from a VCF file. It contains chromossome and position
informations for each marker. It is included to be used as a reference in
order to understand how to convert VCF file to OneMap input data. Also,
it is used for the analysis in the tutorial that comes with OneMap.
Author(s)
Cristiane Hayumi Taniguti, chaytaniguti@gmail.com
See Also
read_onemap for details about objects of class
onemap.
Examples
data(vcf_example_out)
# plot markers informations
plot(vcf_example_out)
onemap documentation built on Nov. 26, 2022, 9:05 a.m.
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| vcf_example_out | R Documentation |
Data generated from VCF file with biallelic markers from a full-sib family derived from two outbred parents
Description
Simulated biallelic data set for an outcross, i.e., an F1 population obtained by crossing two non-homozygous parents.
Usage
data(vcf_example_out)
Format
An object of class onemap.
Details
A total of 92 F1 individuals were genotyped with 27 markers. The data was generated from a VCF file. It contains chromossome and position informations for each marker. It is included to be used as a reference in order to understand how to convert VCF file to OneMap input data. Also, it is used for the analysis in the tutorial that comes with OneMap.
Author(s)
Cristiane Hayumi Taniguti, chaytaniguti@gmail.com
See Also
read_onemap for details about objects of class
onemap.
Examples
data(vcf_example_out) # plot markers informations plot(vcf_example_out)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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