write_onemap_raw: Convert onemap object to onemap raw file
In onemap: Construction of Genetic Maps in Experimental Crosses
View source: R/onemap_read_vcfR.R
write_onemap_raw R Documentation
Convert onemap object to onemap raw file
Description
Converts onemap R object to onemap input file. The input file brings information about the mapping population:
First line: cross type, it can be "outcrossing", "f2 intercross", "f2 backcross", "ri self" or "ri sib".
Second line: number of individuals, number of markers, presence (1) or absence (0) of chromossome and position of the markers, and number of phenotypes mesured.
Third line: Individuals/sample names;
Followed lines: marker name, marker type and genotypes. One line for each marker.
Final lines: chromossome, position and phenotypes informations.
See more about input file format at vignettes.
Usage
write_onemap_raw(onemap.obj = NULL, file.name = NULL)
Arguments
onemap.obj
object of class 'onemap'
file.name
a character for the onemap raw file name. Default is "out.raw"
Value
a onemap input file
Author(s)
Cristiane Taniguti, chtaniguti@tamu.edu
See Also
read_onemap for a description of the output object of class onemap.
Examples
data(onemap_example_out)
write_onemap_raw(onemap_example_out, file.name = paste0(tempfile(), ".raw"))
onemap documentation built on Nov. 26, 2022, 9:05 a.m.
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View source: R/onemap_read_vcfR.R
| write_onemap_raw | R Documentation |
Convert onemap object to onemap raw file
Description
Converts onemap R object to onemap input file. The input file brings information about the mapping population: First line: cross type, it can be "outcrossing", "f2 intercross", "f2 backcross", "ri self" or "ri sib". Second line: number of individuals, number of markers, presence (1) or absence (0) of chromossome and position of the markers, and number of phenotypes mesured. Third line: Individuals/sample names; Followed lines: marker name, marker type and genotypes. One line for each marker. Final lines: chromossome, position and phenotypes informations. See more about input file format at vignettes.
Usage
write_onemap_raw(onemap.obj = NULL, file.name = NULL)
Arguments
onemap.obj |
object of class 'onemap' |
file.name |
a character for the onemap raw file name. Default is "out.raw" |
Value
a onemap input file
Author(s)
Cristiane Taniguti, chtaniguti@tamu.edu
See Also
read_onemap for a description of the output object of class onemap.
Examples
data(onemap_example_out) write_onemap_raw(onemap_example_out, file.name = paste0(tempfile(), ".raw"))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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