ontologySimilarity: Functions for Calculating Ontological Similarities

Functions for calculating semantic similarities between ontological terms or sets of ontological terms based on term information content and assessing statistical significance of similarity in the context of a collection of sets of ontological terms.

AuthorDaniel Greene
Date of publication2016-10-28 01:14:47
MaintainerDaniel Greene <dg333@cam.ac.uk>
LicenseGPL (>= 2)
Version2.2

View on CRAN

Functions

create_sim_index Man page
descendants_IC Man page
gene_GO_terms Man page
get_asym_sim_grid Man page
get_profile_sims Man page
get_sim Man page
get_sim.default Man page
get_sim_grid Man page
get_similarity_rank_matrix Man page
get_sim.integer Man page
get_sim.matrix Man page
get_sim.numeric Man page
get_sim_p Man page
get_sim_p.default Man page
get_sim_p_from_ontology Man page
get_sim_p.integer Man page
get_sim_p.matrix Man page
get_sim_p.numeric Man page
get_sim_p.sim_index Man page
get_sim.sim_index Man page
get_term_set_to_term_sims Man page
get_term_sim_mat Man page
GO_IC Man page
lin Man page
ontologySimilarity Man page
ontologySimilarity-package Man page
resnik Man page
sample_group_sim Man page
sample_group_sim.default Man page
sample_group_sim_from_ontology Man page
sample_group_sim.integer Man page
sample_group_sim.matrix Man page
sample_group_sim.numeric Man page
sample_group_sim.sim_index Man page

Files

ontologySimilarity
ontologySimilarity/inst
ontologySimilarity/inst/doc
ontologySimilarity/inst/doc/ontologySimilarity-GO-example.R
ontologySimilarity/inst/doc/ontologySimilarity-examples.html
ontologySimilarity/inst/doc/ontologySimilarity-GO-example.Rmd
ontologySimilarity/inst/doc/ontologySimilarity-introduction.html
ontologySimilarity/inst/doc/ontologySimilarity-introduction.Rmd
ontologySimilarity/inst/doc/ontologySimilarity-GO-example.html
ontologySimilarity/inst/doc/ontologySimilarity-introduction.R
ontologySimilarity/inst/doc/ontologySimilarity-examples.Rmd
ontologySimilarity/inst/doc/ontologySimilarity-examples.R
ontologySimilarity/src
ontologySimilarity/src/TermList.cpp
ontologySimilarity/src/TermSetSimData.h
ontologySimilarity/src/Interface.h
ontologySimilarity/src/PVal.cpp
ontologySimilarity/src/Sampling.h
ontologySimilarity/src/SimMatrix.cpp
ontologySimilarity/src/PVal.h
ontologySimilarity/src/RcppExports.cpp
ontologySimilarity/src/TermSetSimData.cpp
ontologySimilarity/src/Sampling.cpp
ontologySimilarity/src/SimMatrix.h
ontologySimilarity/src/Interface.cpp
ontologySimilarity/src/TermList.h
ontologySimilarity/NAMESPACE
ontologySimilarity/data
ontologySimilarity/data/GO_IC.RData
ontologySimilarity/data/gene_GO_terms.RData
ontologySimilarity/R
ontologySimilarity/R/group-sim.R ontologySimilarity/R/term-set-sim.R ontologySimilarity/R/data.R ontologySimilarity/R/functions.R ontologySimilarity/R/RcppExports.R
ontologySimilarity/vignettes
ontologySimilarity/vignettes/ontologySimilarity-GO-example.Rmd
ontologySimilarity/vignettes/ontologySimilarity-introduction.Rmd
ontologySimilarity/vignettes/ontologySimilarity-examples.Rmd
ontologySimilarity/MD5
ontologySimilarity/build
ontologySimilarity/build/vignette.rds
ontologySimilarity/DESCRIPTION
ontologySimilarity/man
ontologySimilarity/man/get_profile_sims.Rd ontologySimilarity/man/sample_group_sim_from_ontology.Rd ontologySimilarity/man/gene_GO_terms.Rd ontologySimilarity/man/get_term_set_to_term_sims.Rd ontologySimilarity/man/get_sim.Rd ontologySimilarity/man/get_sim_grid.Rd ontologySimilarity/man/GO_IC.Rd ontologySimilarity/man/get_sim_p.Rd ontologySimilarity/man/descendants_IC.Rd ontologySimilarity/man/sample_group_sim.Rd ontologySimilarity/man/get_sim_p_from_ontology.Rd ontologySimilarity/man/get_asym_sim_grid.Rd ontologySimilarity/man/get_similarity_rank_matrix.Rd ontologySimilarity/man/get_term_sim_mat.Rd ontologySimilarity/man/lin.Rd ontologySimilarity/man/resnik.Rd ontologySimilarity/man/ontologySimilarity-package.Rd ontologySimilarity/man/create_sim_index.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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