ontologySimilarity: Functions for Calculating Ontological Similarities

Functions for calculating semantic similarities between ontological terms or sets of ontological terms based on term information content and assessing statistical significance of similarity in the context of a collection of sets of ontological terms.

AuthorDaniel Greene
Date of publication2016-10-28 01:14:47
MaintainerDaniel Greene <dg333@cam.ac.uk>
LicenseGPL (>= 2)
Version2.2

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Files in this package

ontologySimilarity
ontologySimilarity/inst
ontologySimilarity/inst/doc
ontologySimilarity/inst/doc/ontologySimilarity-GO-example.R
ontologySimilarity/inst/doc/ontologySimilarity-examples.html
ontologySimilarity/inst/doc/ontologySimilarity-GO-example.Rmd
ontologySimilarity/inst/doc/ontologySimilarity-introduction.html
ontologySimilarity/inst/doc/ontologySimilarity-introduction.Rmd
ontologySimilarity/inst/doc/ontologySimilarity-GO-example.html
ontologySimilarity/inst/doc/ontologySimilarity-introduction.R
ontologySimilarity/inst/doc/ontologySimilarity-examples.Rmd
ontologySimilarity/inst/doc/ontologySimilarity-examples.R
ontologySimilarity/src
ontologySimilarity/src/TermList.cpp
ontologySimilarity/src/TermSetSimData.h
ontologySimilarity/src/Interface.h
ontologySimilarity/src/PVal.cpp
ontologySimilarity/src/Sampling.h
ontologySimilarity/src/SimMatrix.cpp
ontologySimilarity/src/PVal.h
ontologySimilarity/src/RcppExports.cpp
ontologySimilarity/src/TermSetSimData.cpp
ontologySimilarity/src/Sampling.cpp
ontologySimilarity/src/SimMatrix.h
ontologySimilarity/src/Interface.cpp
ontologySimilarity/src/TermList.h
ontologySimilarity/NAMESPACE
ontologySimilarity/data
ontologySimilarity/data/GO_IC.RData
ontologySimilarity/data/gene_GO_terms.RData
ontologySimilarity/R
ontologySimilarity/R/group-sim.R ontologySimilarity/R/term-set-sim.R ontologySimilarity/R/data.R ontologySimilarity/R/functions.R ontologySimilarity/R/RcppExports.R
ontologySimilarity/vignettes
ontologySimilarity/vignettes/ontologySimilarity-GO-example.Rmd
ontologySimilarity/vignettes/ontologySimilarity-introduction.Rmd
ontologySimilarity/vignettes/ontologySimilarity-examples.Rmd
ontologySimilarity/MD5
ontologySimilarity/build
ontologySimilarity/build/vignette.rds
ontologySimilarity/DESCRIPTION
ontologySimilarity/man
ontologySimilarity/man/get_profile_sims.Rd ontologySimilarity/man/sample_group_sim_from_ontology.Rd ontologySimilarity/man/gene_GO_terms.Rd ontologySimilarity/man/get_term_set_to_term_sims.Rd ontologySimilarity/man/get_sim.Rd ontologySimilarity/man/get_sim_grid.Rd ontologySimilarity/man/GO_IC.Rd ontologySimilarity/man/get_sim_p.Rd ontologySimilarity/man/descendants_IC.Rd ontologySimilarity/man/sample_group_sim.Rd ontologySimilarity/man/get_sim_p_from_ontology.Rd ontologySimilarity/man/get_asym_sim_grid.Rd ontologySimilarity/man/get_similarity_rank_matrix.Rd ontologySimilarity/man/get_term_sim_mat.Rd ontologySimilarity/man/lin.Rd ontologySimilarity/man/resnik.Rd ontologySimilarity/man/ontologySimilarity-package.Rd ontologySimilarity/man/create_sim_index.Rd

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