get_sim_p_from_ontology | R Documentation |
Compute a similarity p-value by permutation for subgroup of a list of term sets
get_sim_p_from_ontology(
ontology,
term_sets,
information_content = descendants_IC(ontology),
term_sim_method = "lin",
combine = "average",
...
)
ontology |
|
term_sets |
List of character vectors of ontological term IDs. |
information_content |
Numeric vector of information contents of terms (named by term) |
term_sim_method |
Character string equalling either "lin" or "resnik" to use Lin or Resnik's expression for the similarity of terms. |
combine |
Character string - either "average" or "product", indicating whether to use the best-match-product' method, or function accepting two arguments - the first, the similarity matrix obtained by averaging across term sets in |
... |
Other arguments to be passed to |
Numeric value.
get_sim_p
create_sim_index
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.