Man pages for ontologySimilarity
Calculating Ontological Similarities
| create_sim_index | Create light-weight similarity index for fast lookups of... |
| descendants_IC | Get information content based on number of descendants each... |
| gene_GO_terms | Gene Ontology annotation of genes |
| get_asym_sim_grid | Get asymmetrical similarity matrix |
| get_profile_sims | Get similarities of term sets to profile |
| get_sim | Calculate the group similarity of a set of row/column indices |
| get_sim_grid | Get similarity matrix of pairwise similarities of term sets. |
| get_similarity_rank_matrix | Get matrix of similarity rank from similarity matrix |
| get_sim_p | Get similarity p-value |
| get_sim_p_from_ontology | Get similarity p-value for subgroup of list of term sets |
| get_term_set_to_term_sims | Get 'term sets to term' similarity matrix |
| get_term_sim_mat | Get term-term similarity matrix |
| GO_IC | Gene Ontology terms information content. |
| lin | Calculate Lin similarity score of two term sets |
| ontologySimilarity-package | Functions for Calculating Ontological Similarities |
| resnik | Calculate Resnik similarity score of two term sets |
| sample_group_sim | Draw sample of group similarities of groups of given size |
| sample_group_sim_from_ontology | Draw sample of group similarities for groups of given size... |
