Description Usage Arguments Value See Also

p-value of group similarity, calculated by estimating the proportion by random sampling of groups the same size as `group`

which have at least as great group similarity than does `group`

.

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 | ```
get_sim_p(pop_sim, ...)
## S3 method for class 'integer'
get_sim_p(pop_sim, ...)
## S3 method for class 'numeric'
get_sim_p(pop_sim, group, ...)
## S3 method for class 'matrix'
get_sim_p(pop_sim, group, ...)
## S3 method for class 'sim_index'
get_sim_p(pop_sim, group, ...)
## Default S3 method:
get_sim_p(pop_sim, group, type, min_its = 1000,
max_its = 1e+05, signif = 0.05, log_dismiss = log(1e-06),
group_sim = "average", ...)
``` |

`pop_sim` |
An object representing the similarities of an indexed population of objects. |

`...` |
Arguments for |

`group` |
Character or integer vector specifying names/indices of subgroup for which to calculate a group similarity p-value. |

`type` |
Either "matrix", "sim_index" or "numeric" - the type of the |

`min_its` |
Minimum number of simulated group similarities to calculate |

`max_its` |
Maximum number of simulated group similarities to calculate |

`signif` |
Threshold p-value of statistical significance |

`log_dismiss` |
Threshold of log probability, below which to trigger return of current estimated p-value |

`group_sim` |
String Either "average" or "min", determining how to calculate the similarity of a group of term sets over all pairwise combinations of group members |

p-value.

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