optiSel: Optimum Contribution Selection and Pedigree Analysis

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Computation of optimum contributions of selection candidates in animal breeding, genetic contributions, the native effective size, native genome equivalents, the diversity of native alleles, and pedigree completeness. Moreover, functions are provided for preparing and plotting pedigrees.

Author
Robin Wellmann
Date of publication
2016-06-27 17:22:52
Maintainer
Robin Wellmann <r.wellmann@uni-hohenheim.de>
License
GPL-2
Version
0.1

View on CRAN

Man pages

breedcont
breed contributions
completeness
Computes completeness of the pedigree
conttac
Contributions To Age Cohorts
ExamplePed
Pedigree of Hinterwald cattle
genecont
Calculation of genetic contributions.
help.opticont
Available objective functions and constraints.
kin
Computation of kinships according to different definitions
Kinship
Simulated phenotypes of Hinterwald cattle
kinwac
Kinships With Age Cohorts
opticont
Computation of optimum genetic contributions for the breeding...
optiSel-package
Optimum Contribution Selection and Pedigree Analysis
PedigWithErrors
Pedigree of Hinterwald cattle
pedplot
Plot a pedigree
Phen
Simulated phenotypes of Hinterwald cattle
prePed
Prepares a pedigree
subPed
Creates a subset of a large pedigree
summary.kinwac
Computes genetic parameters for all age cohorts
summary.opticont
Summary statistics and check of validity for optimum...

Files in this package

optiSel
optiSel/NAMESPACE
optiSel/data
optiSel/data/PedigWithErrors.rda
optiSel/data/ExamplePed.rda
optiSel/data/Phen.rda
optiSel/data/Kin.rda
optiSel/R
optiSel/R/getNe.R
optiSel/R/summary.kinwac.R
optiSel/R/summary.opticont.R
optiSel/R/breedcont.R
optiSel/R/pedplot.R
optiSel/R/opticont.R
optiSel/R/genecont.R
optiSel/R/kinwac.R
optiSel/R/opticontx.R
optiSel/R/prePed.R
optiSel/R/subPed.R
optiSel/R/completeness.R
optiSel/R/kin.R
optiSel/R/conttac.R
optiSel/MD5
optiSel/DESCRIPTION
optiSel/man
optiSel/man/subPed.Rd
optiSel/man/opticont.Rd
optiSel/man/kin.Rd
optiSel/man/genecont.Rd
optiSel/man/summary.kinwac.Rd
optiSel/man/Kinship.Rd
optiSel/man/optiSel-package.Rd
optiSel/man/Phen.Rd
optiSel/man/PedigWithErrors.Rd
optiSel/man/prePed.Rd
optiSel/man/summary.opticont.Rd
optiSel/man/ExamplePed.Rd
optiSel/man/conttac.Rd
optiSel/man/breedcont.Rd
optiSel/man/completeness.Rd
optiSel/man/pedplot.Rd
optiSel/man/help.opticont.Rd
optiSel/man/kinwac.Rd