sampleIndiv: Sample Individuals from Pedigree

Description Usage Arguments Details Value Author(s) Examples

Description

Sampling Individuals from a Pedigree.

Usage

1
sampleIndiv(Pedig, from="Born", each=100)

Arguments

Pedig

Pedigree with column Indiv and the column specified in parameter from.

from

Column name. From each cohort specified in this column (e.g. year of birth), the number of individuals specified in parameter each is sampled. If a cohort contains less individuals, then all individuals are chosen.

each

Number of individuals to be sampled from each cohort.

Details

From each cohort, a specified number of individuals will be sampled. If a cohort contains less individuals, then all individuals are sampled. This may be needed for estimating population specific parameters from a subset of a large pedigree to reduce computation time.

Value

Character vector containing the IDs of the individuals.

Author(s)

Robin Wellmann

Examples

1
2
3
4
5
6
data("PedigWithErrors")
set.seed(1)
Pedig <- prePed(PedigWithErrors)
use   <- Pedig$Breed=="Hinterwaelder"
keep  <- sampleIndiv(Pedig[use, ], from="Born", each=5)
keep

Example output

Warning messages:
1: In rgl.init(initValue, onlyNULL) : RGL: unable to open X11 display
2: 'rgl.init' failed, running with 'rgl.useNULL = TRUE'. 
Pedigree loops were detected. We recommend to correct them manually before
using prePed(). The parents of the following individuals are set to unknown
to remove the loops.
                           Sire             Dam
276000802875148 276000803622423 276000890878480
276000811476506 276000810087663 276000811476506

The sex of the following animals was not compatible with the pedigree, so
it was modified:
                           Sire             Dam
276000810087663 276000802940621 276000802925028

  [1] "276000802420745" "276000802420386" "276000802420682" "276000802820036"
  [5] "276000802420625" "276000802420285" "276000802420484" "276000802820056"
  [9] "276000802420078" "276000802420142" "276000802420207" "276000802420409"
 [13] "276000802420628" "276000802420360" "276000802820072" "276000802820020"
 [17] "276000802820113" "276000802420123" "276000802420233" "276000802420346"
 [21] "276000802420055" "276000802420529" "276000802820043" "276000802420626"
 [25] "276000802420593" "276000802420277" "276000802420511" "276000802420043"
 [29] "276000802420501" "276000802420361" "276000802820168" "276000800000675"
 [33] "276000802060632" "276000802420504" "276000802420079" "276000802420110"
 [37] "276000802420200" "276000803611122" "276000803611123" "276000802420270"
 [41] "276000802420082" "276000803611127" "276000802420538" "276000802420756"
 [45] "276000802820076" "276000803611129" "276000802420025" "276000802420269"
 [49] "276000802820064" "276000802280250" "276000802820109" "276000802420315"
 [53] "276000802420579" "276000802820048" "276000802420712" "276000802420392"
 [57] "276000802420172" "276000802820042" "276000803611144" "276000803611140"
 [61] "276000802420143" "276000802820075" "276000802420135" "276000802820046"
 [65] "276000802420139" "276000802420412" "276000802420512" "276000802420196"
 [69] "276000802820172" "276000802420724" "276000802422668" "276000802422215"
 [73] "276000803611186" "276000802422555" "276000802422209" "276000802422327"
 [77] "276000803611222" "276000802825221" "276000802422343" "276000802422323"
 [81] "276000802422726" "276000802422489" "276000802422460" "276000802422445"
 [85] "276000802422463" "276000802423391" "276000802423346" "276000802423274"
 [89] "276000803611245" "276000803611247" "276000802831834" "276000802423588"
 [93] "276000802424106" "276000802424616" "276000802423987" "276000802425099"
 [97] "276000802425208" "276000802425048" "276000803611271" "276000802425004"
[101] "276000802428829" "276000802427252" "276000803611305" "276000802425273"
[105] "276000802426123" "276000803622403" "276000802426274" "276000802426172"
[109] "276000802426235" "276000803611349" "276000802847521" "276000803611365"
[113] "276000802847421" "276000802843993" "276000802427567" "276000803622409"
[117] "276000802427330" "276000802427691" "276000802427299" "276000802853813"
[121] "276000802428243" "276000802856323" "276000802428354" "276000802428389"
[125] "276000802428297" "276000802862913" "276000802429242" "276000802428991"
[129] "276000802428937" "276000802428873" "276000802865630" "276000802865638"
[133] "276000802865658" "276000802866106" "276000802866021" "276000802875316"
[137] "276000802875181" "276000802875129" "276000802875170" "276000802875070"
[141] "276000802875526" "276000802883676" "276000802907816" "276000802875571"
[145] "276000802879841" "276000802883952" "276000802883843" "276000802918010"
[149] "276000802884040" "276000802918235" "276000802884325" "276000802884204"
[153] "276000802884216" "276000802884207" "276000802884125" "276000802908525"
[157] "276000802908564" "276000802884511" "276000802898219" "276000802898089"
[161] "276000802898273" "276000802898395" "276000802898772" "276000802898599"
[165] "276000802908319" "276000802898810" "276000802918549" "276000802898906"
[169] "276000802898752" "276000802898624" "276000802908263" "276000802908095"
[173] "276000802908156" "276000802908136" "276000802908282" "276000802908410"
[177] "276000802908646" "276000802908381" "276000802918213" "276000802918520"
[181] "276000802908744" "276000802907878" "276000802908727" "276000802903776"
[185] "276000802932078" "276000802918415" "276000802918330" "276000802918641"
[189] "276000802937298" "276000802918592" "276000802918683" "276000802918869"
[193] "276000802918688" "276000802918943" "276000802918623" "276000802932286"
[197] "276000802925411" "276000804741650" "276000802925669" "276000802925240"
[201] "276000802932139" "276000802925931" "276000802925986" "276000802932103"
[205] "276000802925993" "276000802932551" "276000802944711" "276000802932316"
[209] "276000891056011" "276000801393808" "276000891184172" "276000802938332"
[213] "276000802938371" "276000802938366" "276000802938539" "276000890844361"
[217] "276000802940421" "276000802937394" "276000802940680" "276000802940798"
[221] "276000802947725" "276000802947451" "276000802947405" "276000802947088"
[225] "276000891257521" "276000808406667" "276000890257818" "276000890409308"
[229] "276000808406666" "276000808336837" "276000890657297" "276000890728721"
[233] "276000808519301" "276000808519325" "276000808854502" "276000810087378"
[237] "276000890207032" "276000890257605" "276000810332402" "276000810332941"
[241] "276000890436722" "276000890295183" "276000810331374" "276000810331425"
[245] "276000890612505" "276000810958205" "276000890736617" "276000811157793"
[249] "276000810958699" "276000890601572" "276000811287356" "276000891127252"
[253] "276000810958300" "276000810787197" "276000810958905" "276000890871688"
[257] "276000811596233" "276000810748578" "276000890830017" "276000890778208"
[261] "276000891458441" "276000891243813" "276000891284660" "276000811903063"
[265] "276000891615941" "276000811903175" "276000812346791" "276000891307486"
[269] "276000812256003" "276000812346909" "276000891661503" "276000812496744"
[273] "276000812803316" "276000812497627" "276000891657068" "276000891942285"
[277] "276000891842498" "276000891928822" "276000891974304" "276000812749701"
[281] "276000813155672" "276000813255917" "276000813025168" "276000812750057"
[285] "276000892111363" "276000813609142" "276000892197681" "276000813256360"
[289] "276000813533611" "276000812939268" "276000813550109" "276000813677675"
[293] "276000891955445" "276000813368937" "276000891657435" "276000813838647"
[297] "276000892508945" "276000813907230" "276000813798399" "276000892547675"
[301] "276000892533335" "276000814117615" "276000892477922" "276000892658161"
[305] "276000814047526"

optiSel documentation built on Jan. 16, 2021, 5:30 p.m.