pedplot: Plots a Pedigree

In optiSel: Optimum Contribution Selection and Population Genetics

Plots a Pedigree

Description

Plots a pedigree

Usage

pedplot(Pedig, affected=NULL, status=NULL, label="Indiv", ...)

Arguments

Pedig	Data frame containing the pedigree with columns Indiv (indivdual ID), Sire, Dam, and Sex. Use subPed to ensure that the pedigree is in the correct format.
affected	Logical vector indicating for each individual if its symbol should be plotted in colour. The default NULL means that the individuals in column keep of data frame Pedig are plotted in colour (if present).
status	Logical vector indicating for each individual if its symbol in the plot should be crossed out. The default NULL means that animals from other breeds than those plotted in colour are crossed out.
label	Character vector containing the columns of data frame Pedig to be used as labels.
...	Options passed to the underlying function plot.pedigree from package kinship2.

Details

This function plots a pedigree. If data frame Pedig has logical column keep then the default values mean that the symbols of these animals are plotted in color and for animals from other breeds the symbol is crossed out.

Value

An invisible list returned by the underlying function plot.pedigree from package kinship2.

Author(s)

Robin Wellmann

Examples

data(PedigWithErrors)

sPed  <- subPed(PedigWithErrors, keep="276000810087543", prevGen=3, succGen=2)
pedplot(sPed, mar=c(2,4,2,4), label=c("Indiv", "Born", "Breed"), cex=0.4)

optiSel documentation built on Sept. 11, 2024, 7:19 p.m.