noffspring: Calculates Optimum Numbers of Offspring

In optiSel: Optimum Contribution Selection and Population Genetics

Calculates Optimum Numbers of Offspring

Description

Calculates the optimum numbers of offspring from optimum contributions of selection candidates.

Usage

noffspring(cand, N, random=TRUE)

Arguments

cand	Data frame with optimum contributions (column oc), sexes (column Sex), and IDs (column Indiv) of the selection candidates.
N	Desired number of individuals in the offspring population.
random	Logical. If 2*N*oc[i] is not an integer value (say 2*N*oc[i]=11.4) then individual i will have either 11 or 12 offspring. The actual number is either determined randomly or not.

Details

The function calculates the optimum numbers of offspring of the selection candidates from the optimum contributions cand$oc and the size N of the offspring population.

Value

Data frame with column Indiv containing the individual IDs and column nOff containing the optimum numbers of offspring.

Column nOff is approximately 2*N*cand$oc with sum(noff[cand$Sex=="male"])=N and sum(noff[cand$Sex=="female"])=N.

Author(s)

Robin Wellmann

Examples

set.seed(1)
data(PedigWithErrors)

Pedig      <- prePed(PedigWithErrors, thisBreed="Hinterwaelder")
use        <- Pedig$Born %in% (1998:2008) & Pedig$Breed=="Hinterwaelder"
Population <- sampleIndiv(Pedig[use, ], each=50)
pKin       <- pedIBD(Pedig, keep.only=Population)
Phen       <- Pedig[Population, ]
Phen$isCandidate <- Phen$Born %in% (2003:2008)

cont       <- agecont(Pedig, Population)
cand       <- candes(phen=Phen, fA=pedIBD(Pedig, keep.only=Phen$Indiv), cont=cont)
con        <- list(ub.fA=0.0175, uniform="female")
Offspring  <- opticont("max.BV", cand, con, trace = FALSE)

N <- 250
Candidate <- Offspring$parent
Candidate$nOff <- noffspring(Candidate, N)$nOff

sum(Candidate$nOff[Candidate$Sex=="male"])
#[1] 250

sum(Candidate$nOff[Candidate$Sex=="female"])
#[1] 250

round(2*N*Candidate$oc-Candidate$nOff, 2)

optiSel documentation built on Sept. 11, 2024, 7:19 p.m.