R/agf.R

In orthGS: Orthology vs Paralogy Relationships among Glutamine Synthetase from Plants

#' Angiosperms Gymnosperms Ferns
#'
#' @format
#' A dataframe with 275 rows (GS proteins) and 23 columns:
#' \describe{
#'		\item{n}{Reference number}
#'		\item{phylo_id}{Unique identification label of the protein/gen}
#'		\item{species}{Species}
#'		\item{taxon}{Acrogymnospermae, Angiospermae, Polypodiopsida}
#'		\item{dna}{CDS sequence}
#'		\item{prot}{Protein sequence}
#'		\item{short}{Unique three letter identification of the species}
#'		\item{gs}{GS2, GS1a or GS1b_Ang, GS1b_Gym}
#'		\item{pI}{isoelectric point}
#'		\item{factor}{Ferns, GS2, GS1a, GS1b_Ang, GS1b_Gym}
#'		\item{size}{number of residues}
#'		\item{CSpos}{position signal}
#'		\item{prediction}{prediction}
#'		\item{Lk_SP}{seq pep}
#'		\item{Lk_mTP}{mit}
#'		\item{Lk_cTP}{chl}
#'		\item{Lk_Thylak}{thy}
#'		\item{secAa}{amino acid at position 2}
#'		\item{core}{core}
#'		\item{dabase}{db}
#'		\item{acc}{acc}
#'		\item{up_id}{uniprot}
#'		\item{note}{note}
#' }
#' @source
#' It has been manually curated by the authors
"agf"