otuSummary: Summarizing OTU Table Regarding the Composition, Abundance and Beta Diversity of Abundant and Rare Biospheres

Summarizes the taxonomic composition, diversity contribution of the rare and abundant community by using OTU (operational taxonomic unit) table which was generated by analyzing pipeline of 'QIIME' or 'mothur'. The rare biosphere in this package is subset by the relative abundance threshold (for details about rare biosphere please see Lynch and Neufeld (2015) <doi:10.1038/nrmicro3400>).

Getting started

Package details

AuthorSizhong Yang
MaintainerSizhong Yang <[email protected]>
LicenseGPL (>= 3)
Version0.1.0
URL https://github.com/camel315/otuSummary
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("otuSummary")

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otuSummary documentation built on May 2, 2019, 2:07 a.m.