bplot: Generate barplot with custom controls on the x axis labels

In otuSummary: Summarizing OTU Table Regarding the Composition, Abundance and Beta Diversity of Abundant and Rare Biospheres

Generate barplot with custom controls on the x axis labels

Description

barplot with custom controls on the x axis labels, e.g. rotation.

Usage

bplot(data, srt = 45, yoff = 0.05, dataoff = 0.025, barcol = "grey", grid = TRUE, ...)

Arguments

data	Numeric, vector to plot in barplot.
srt	Numeric, rotation degree of the x axis labels.
yoff	Numeric, vertical offset of x axis labels.
dataoff	Numeric, vertical offset of data labels in relation to the bar height.
barcol	Character, color of bar. By default is grey.
grid	Logical, whether show the grids in the plot.
...	arguments to be passed to/from other methods.

Examples

data(otumothur)

summaryInfo <- otuReport(otutab = otumothur, siteInCol = TRUE, taxhead = "taxonomy",
    platform = "qiime", percent = FALSE, taxlevel = "phylum", collap = ";")

length(summaryInfo)
names(summaryInfo)
summaryInfo[[1]]

bplot(summaryInfo[["taxaFreqs"]])

otuSummary documentation built on Sept. 8, 2023, 6:05 p.m.