calc_bc: calculate the Bray-Curtis dissimilarity
In otuSummary: Summarizing OTU Table Regarding the Composition, Abundance and Beta Diversity of Abundant and Rare Biospheres
calc_bc R Documentation
calculate the Bray-Curtis dissimilarity
Description
This function will calculate the Bray-Curtis distance matrix for community data.
Usage
calc_bc(df)
Arguments
df
data frame or matrix, i.e. OTU or ASV table with sites in rows and species in columns.
Details
This function will calculate the dissimilarity and output as lower triangular distance matrix.
Value
The function returns lower triangular distrance matrix.
Author(s)
Sizhong Yang <yanglzu@163.com>
Examples
data(otuqiime)
mat <- calc_bc(t(otuqiime[,-ncol(otuqiime)]))
mat2 <- as.matrix(mat)
dim(mat2)
otuSummary documentation built on Sept. 8, 2023, 6:05 p.m.
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| calc_bc | R Documentation |
calculate the Bray-Curtis dissimilarity
Description
This function will calculate the Bray-Curtis distance matrix for community data.
Usage
calc_bc(df)
Arguments
df |
data frame or matrix, i.e. OTU or ASV table with sites in rows and species in columns. |
Details
This function will calculate the dissimilarity and output as lower triangular distance matrix.
Value
The function returns lower triangular distrance matrix.
Author(s)
Sizhong Yang <yanglzu@163.com>
Examples
data(otuqiime)
mat <- calc_bc(t(otuqiime[,-ncol(otuqiime)]))
mat2 <- as.matrix(mat)
dim(mat2)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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