fillTax2: reshape the heirarchical taxonomy

In otuSummary: Summarizing OTU Table Regarding the Composition, Abundance and Beta Diversity of Abundant and Rare Biospheres

reshape the heirarchical taxonomy

Description

this function is similar to fillTax, except that this function has no parameter of "fillAll"

Usage

fillTax2(x, split = ';', prefix=TRUE)

Arguments

x	Character, structured strings giving the heirarchical rank of taxonomy. Please convert to character object for your input taxonomic information before using.
split	Character, the seperator for the heirarchical taxonomy.
prefix	Logical, whether contains prefix in the taxonomic strings, default TRUE.

See Also

fillTax, slimTax

Examples

  test = 'd__Bacteria;p__Planctomycetota;c__Planctomycetes;o__Gemmatales;f__Gemmataceae;g__;s__'
  fillTax2(x = test, split = ';', prefix=TRUE)

otuSummary documentation built on Sept. 8, 2023, 6:05 p.m.