Man pages for otuSummary
Summarizing OTU Table Regarding the Composition, Abundance and Beta Diversity of Abundant and Rare Biospheres

alphaDiversityCalculate the alpha diversity indices
contribContribution of rare/abundant biosphere to the total...
matrixConvertConvert lower triangular distance matrix into data frame
ordinationQuickly check the constrained or unconstrained ordination...
otu4typeAn example OTU table with samples and taxonomy in rows and...
otuCollapcollapse a OTU table at given level.
otumothurOTU table generated from 8 lakes over 4 years
otuqiimeOTU table generated from 8 lakes over 4 years
otuReportSummarize the community structure and abundance with OTU...
pbrayPartition the Bray-Curtis distance dissimilarity
rareBiosphereSummarize different subgroups in the rare biosphere
subOTUSubset a OTU table
typeConvertTranspose the data frame if there is data type conversion.
otuSummary documentation built on April 17, 2020, 1:27 a.m.