Man pages for otuSummary
Summarizing OTU Table Regarding the Composition, Abundance and Beta Diversity of Abundant and Rare Biospheres
| alphaDiversity | Calculate the alpha diversity indices |
| bplot | Generate barplot with custom controls on the x axis labels |
| calc_bc | calculate the Bray-Curtis dissimilarity |
| contrib | Contribution of rare/abundant biosphere to the total... |
| fillTax | reshape the heirarchical taxonomy |
| fillTax2 | reshape the heirarchical taxonomy |
| matrixConvert | Convert lower triangular distance matrix into data frame |
| otu4type | An example OTU table with samples and taxonomy in rows and... |
| otuCollap | collapse a OTU table at given level. |
| otumothur | OTU table generated from 8 lakes over 4 years |
| otuqiime | OTU table generated from 8 lakes over 4 years |
| otuReport | Summarize the community structure and abundance with OTU... |
| pbray | Partition the Bray-Curtis distance dissimilarity |
| rareBiosphere | Summarize different subgroups in the rare biosphere |
| slimTax | reshape heirarchical taxonomy |
| subOTU | Subset a OTU table |
| typeConvert | Transpose the data frame if there is data type conversion. |
