geoFilter2: Conversion between run_ids and geo objects often contain...
In palmid: RdRP Analysis Suite
Description
Usage
Arguments
Value
Examples
Description
Conversion between run_ids and geo objects often contain NA/NULL values
This removes NA-containing rows
Usage
1
geoFilter2(palm.sra, wobble = FALSE, wradius = 0.005)
Arguments
palm.sra
data.frame, output df from get.sraGeo()
wobble
boolean, add a wobble to each point to prevent overplotting [FALSE]
wradius
numeric, maximum magnitude of wobble [0.005]
Value
modified palm.sra data.frame
Examples
1
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data("waxsys.palm.sra")
# waxsys.palm.sra
# -- 4159 rows
waxsys.geo.filtered <- geoFilter2(waxsys.palm.sra)
# -- 2300 rows
# 2300 / 4159 SRA-libraries have associated geospatial meta-data
palmid documentation built on Oct. 15, 2021, 9:06 a.m.
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Description Usage Arguments Value Examples
Description
Conversion between run_ids and geo objects often contain NA/NULL values This removes NA-containing rows
Usage
1 | geoFilter2(palm.sra, wobble = FALSE, wradius = 0.005)
|
Arguments
palm.sra |
data.frame, output df from get.sraGeo() |
wobble |
boolean, add a wobble to each point to prevent overplotting [FALSE] |
wradius |
numeric, maximum magnitude of wobble [0.005] |
Value
modified palm.sra data.frame
Examples
1 2 3 4 5 6 7 8 | data("waxsys.palm.sra")
# waxsys.palm.sra
# -- 4159 rows
waxsys.geo.filtered <- geoFilter2(waxsys.palm.sra)
# -- 2300 rows
# 2300 / 4159 SRA-libraries have associated geospatial meta-data
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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