get.tax: get.tax

In palmid: RdRP Analysis Suite

Description

Retrieve the taxonomic identifiers for a set of 'palm_id' for a given rank.

Usage

get.tax(palm_ids, con, rank = "family", ordinal = FALSE)

Arguments

palm_ids	character, set of 'palm_id' to lookup in palmdb
con	pq-connection, use SerratusConnect()
rank	character, taxonomic rank to retrieve. One of "species", "genus", "family" (Default), "phylum"
ordinal	boolean, return an ordered vector based on input 'palm_ids'

Value

character, unique 'tax_id' vector (i.e. "Coronaviridae")

Examples

con <- SerratusConnect()

# Return species-identifiers for a set of palmprints (uxxx)
get.tax(c("u2", "u1337"), con, rank = "species")

palmid documentation built on Oct. 15, 2021, 9:06 a.m.