get.sraBio: get.sraBio

In palmid: RdRP Analysis Suite

Description

Retrieve the "BioSample" field for a set of SRA 'run_id'

Usage

get.sraBio(run_ids, con, ordinal = FALSE)

Arguments

run_ids	character, SRA 'run_id'
con	pq-connection, use SerratusConnect()
ordinal	boolean, return 'run_ids' ordered vector [FALSE]

Value

data.frame, run_id, biosample character vectors

Examples

# SRA Library of interest
con <- SerratusConnect()
library.bioSample   <- get.sraBio( 'SRR9968562' , con)

palmid documentation built on Oct. 15, 2021, 9:06 a.m.