get.sraGeo: get.sraGeo
In palmid: RdRP Analysis Suite
Description
Usage
Arguments
Value
Examples
Description
Retrieve the geo_coordinates for a set of SRA 'run_id'
Usage
1
get.sraGeo(run_ids = NULL, biosample_ids = NULL, con, ordinal = FALSE)
Arguments
run_ids
character, SRA 'run_id'
biosample_ids
character, BioSample 'biosample_id'
con
pq-connection, use SerratusConnect()
ordinal
boolean, return 'run_ids' ordered vector [F]
Value
data.frame, lon and lat numeric vectors
Examples
1
2
con <- SerratusConnect()
palm.geo <- get.sraGeo(run_ids = "SRR9968562", con = con)
palmid documentation built on Oct. 15, 2021, 9:06 a.m.
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Description Usage Arguments Value Examples
Description
Retrieve the geo_coordinates for a set of SRA 'run_id'
Usage
1 | get.sraGeo(run_ids = NULL, biosample_ids = NULL, con, ordinal = FALSE)
|
Arguments
run_ids |
character, SRA 'run_id' |
biosample_ids |
character, BioSample 'biosample_id' |
con |
pq-connection, use SerratusConnect() |
ordinal |
boolean, return 'run_ids' ordered vector [F] |
Value
data.frame, lon and lat numeric vectors
Examples
1 2 | con <- SerratusConnect()
palm.geo <- get.sraGeo(run_ids = "SRR9968562", con = con)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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