pathClass: Classification using biological pathways as prior knowledge

pathClass is a collection of classification methods that use information about feature connectivity in a biological network as an additional source of information. This additional knowledge is incorporated into the classification a priori. Several authors have shown that this approach significantly increases the classification performance.

AuthorMarc Johannes
Date of publication2013-07-01 07:43:40
MaintainerMarc Johannes <JohannesMarc@gmail.com>
LicenseGPL (>= 2)
Version0.9.4

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Functions

adjacency.matrix Man page
as.adjacencyList Man page
calc.diffusionKernel Man page
crossval Man page
desummarize.ranks Man page
extractFeatures Man page
fit.graph.svm Man page
fit.networkBasedSVM Man page
fit.rfe Man page
fit.rrfe Man page
getGeneRanks Man page
mapping Man page
matchMatrices Man page
pathClass Man page
pathClass-package Man page
plot.pathClassResult Man page
predict.graphSVM Man page
predict.networkBasedSVM Man page
predict.rfe Man page
predict.rrfe Man page
read.hprd Man page
summarizeProbes Man page
x Man page
y Man page

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