Description Usage Arguments Value Author(s) Examples
View source: R/RecursiveFeatureElimination.R
Obtains predictions from a fitted RFE object.
1 2 |
object |
a fitted object of class inheriting from 'rfe' |
newdata |
a matrix with variables to predict |
type |
|
... |
currently ignored. |
the predictions.
Marc Johannes JohannesMarc@gmail.com
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Loading required package: svmpath
Loaded svmpath 0.955
Loading required package: kernlab
Loading required package: affy
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, cbind, colMeans, colSums, colnames, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply,
setdiff, sort, table, tapply, union, unique, unsplit, which,
which.max, which.min
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: ROCR
Loading required package: gplots
Attaching package: 'gplots'
The following object is masked from 'package:stats':
lowess
Loading required package: igraph
Attaching package: 'igraph'
The following objects are masked from 'package:BiocGenerics':
normalize, union
The following objects are masked from 'package:stats':
decompose, spectrum
The following object is masked from 'package:base':
union
Loading required package: lpSolve
Warning message:
In read.dcf(con) :
URL 'http://bioconductor.org/BiocInstaller.dcf': status was 'Couldn't resolve host name'
500 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 0.001
Model Updated. Spanbound= 0.6 , C= 0.001 , 500 features.
450 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 0.001
Model Updated. Spanbound= 0.6 , C= 0.001 , 450 features.
405 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 0.001
Model Updated. Spanbound= 0.6 , C= 0.001 , 405 features.
365 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 0.001
Model Updated. Spanbound= 0.6 , C= 0.001 , 365 features.
329 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 0.001
Model Updated. Spanbound= 0.6 , C= 0.001 , 329 features.
296 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 0.001
Model Updated. Spanbound= 0.4 , C= 0.001 , 296 features.
266 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 1
Model Updated. Spanbound= 0.2 , C= 1 , 266 features.
239 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 1
Model Updated. Spanbound= 0 , C= 1 , 239 features.
215 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 0.1
Model Updated. Spanbound= 0 , C= 0.1 , 215 features.
193 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 0.1
Model Updated. Spanbound= 0 , C= 0.1 , 193 features.
174 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 0.01
Model Updated. Spanbound= 0 , C= 0.01 , 174 features.
157 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 0.01
Model Updated. Spanbound= 0 , C= 0.01 , 157 features.
141 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 0.01
Model Updated. Spanbound= 0 , C= 0.01 , 141 features.
127 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 0.01
Model Updated. Spanbound= 0 , C= 0.01 , 127 features.
114 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 0.01
Model Updated. Spanbound= 0 , C= 0.01 , 114 features.
103 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 0.01
Model Updated. Spanbound= 0 , C= 0.01 , 103 features.
93 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 0.01
Model Updated. Spanbound= 0 , C= 0.01 , 93 features.
84 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 0.01
Model Updated. Spanbound= 0 , C= 0.01 , 84 features.
76 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 0.01
Model Updated. Spanbound= 0 , C= 0.01 , 76 features.
68 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 0.01
Model Updated. Spanbound= 0 , C= 0.01 , 68 features.
61 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 0.01
Model Updated. Spanbound= 0 , C= 0.01 , 61 features.
55 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 0.01
Model Updated. Spanbound= 0 , C= 0.01 , 55 features.
49 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 0.01
Model Updated. Spanbound= 0 , C= 0.01 , 49 features.
44 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 0.01
Model Updated. Spanbound= 0 , C= 0.01 , 44 features.
40 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 0.01
Model Updated. Spanbound= 0 , C= 0.01 , 40 features.
36 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 0.01
Model Updated. Spanbound= 0 , C= 0.01 , 36 features.
32 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 0.1
Model Updated. Spanbound= 0 , C= 0.1 , 32 features.
29 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 0.1
Model Updated. Spanbound= 0 , C= 0.1 , 29 features.
26 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 0.1
Model Updated. Spanbound= 0 , C= 0.1 , 26 features.
23 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 0.1
Model Updated. Spanbound= 0 , C= 0.1 , 23 features.
21 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 0.1
Model Updated. Spanbound= 0 , C= 0.1 , 21 features.
19 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 0.1
Model Updated. Spanbound= 0 , C= 0.1 , 19 features.
17 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 0.1
Model Updated. Spanbound= 0 , C= 0.1 , 17 features.
15 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 0.1
Model Updated. Spanbound= 0 , C= 0.1 , 15 features.
13 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 0.1
Model Updated. Spanbound= 0 , C= 0.1 , 13 features.
12 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 0.1
Model Updated. Spanbound= 0 , C= 0.1 , 12 features.
11 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 0.1
Model Updated. Spanbound= 0 , C= 0.1 , 11 features.
10 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 0.1
Model Updated. Spanbound= 0 , C= 0.1 , 10 features.
9 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 0.1
Model Updated. Spanbound= 0 , C= 0.1 , 9 features.
8 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 0.1
Model Updated. Spanbound= 0 , C= 0.1 , 8 features.
7 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 0.1
Model Updated. Spanbound= 0 , C= 0.1 , 7 features.
6 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 0.1
Model Updated. Spanbound= 0 , C= 0.1 , 6 features.
5 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 0.1
Model Updated. Spanbound= 0 , C= 0.1 , 5 features.
4 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 0.1
Model Updated. Spanbound= 0 , C= 0.1 , 4 features.
3 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 0.1
Model Updated. Spanbound= 0 , C= 0.1 , 3 features.
2 Features left.
Trying C= 0.001
Trying C= 0.01
Trying C= 0.1
Trying C= 1
Trying C= 10
Trying C= 100
Trying C= 1000
Best C= 1
Model Updated. Spanbound= 0 , C= 1 , 2 features.
Best Model is: Spanbound= 0 , C= 1 , 2 features.
[,1]
F 4.208259
G 19.113883
H -38.972023
I -51.146420
J -15.353622
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