read.hprd: Parse the HPRD flat file

Description Usage Arguments Value Author(s) Examples

View source: R/PathwayMethods.R

Description

This function parses the tab delimited flat file of protein-protein interactions coming from the HPRD (http://www.hprd.org/download).

Usage

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  read.hprd(fname, chipProteins = NULL)

Arguments

fname

path to the HPRD flat file.

chipProteins

limit the resulting adjacency matrix to certain proteins.

Value

An adjacency matrix

Author(s)

Marc Johannes JohannesMarc@gmail.com

Examples

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## Not run: 
hprd <- read.hprd('BINARY_PROTEIN_PROTEIN_INTERACTIONS.txt')

## End(Not run)

pathClass documentation built on May 29, 2017, 11:44 p.m.