API for pathClass
Classification using biological pathways as prior knowledge
| Global functions | |
|---|---|
| adjacency.matrix | Man page |
| as.adjacencyList | Man page Source code |
| bdiag | Source code |
| calc.auc | Source code |
| calc.diffusionKernel | Man page Source code |
| calc.graph.svm | Source code |
| calc.networkBasedSVM | Source code |
| classify | Source code |
| compare.auc | Source code |
| create.constraints.matrix | Source code |
| crossval | Man page Source code |
| desummarize.ranks | Man page Source code |
| extractFeatures | Man page Source code |
| fit.graph.svm | Man page Source code |
| fit.networkBasedSVM | Man page Source code |
| fit.rfe | Man page Source code |
| fit.rrfe | Man page Source code |
| geneRank | Source code |
| getGeneRanks | Man page Source code |
| getRanking | Source code |
| mapping | Man page |
| matchMatrices | Man page Source code |
| pathClass | Man page |
| pathClass-package | Man page |
| plot.pathClassResult | Man page Source code |
| predict.graphSVM | Man page Source code |
| predict.networkBasedSVM | Man page Source code |
| predict.rfe | Man page Source code |
| predict.rrfe | Man page Source code |
| read.hprd | Man page Source code |
| spanbound | Source code |
| summarizeProbes | Man page Source code |
| svm.fit | Source code |
| svm.predict | Source code |
| x | Man page |
| y | Man page |
