experiment_list1: Molecular perturbations.

Description Usage Details Examples

Description

A list of functions that represent possible molecular perturbations to be performed on the network.

Usage

1

Details

A list of 10 functions. Each function takes as input a named numeric parameter vector theta and an initial condition named numeric vector initial_conditions. Each function outputs a list with the following slots:

The 10 functions perform the following operations on their input (parameters numbering might not be always coherent with names):

Examples

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data(experiment_list1)
data(knobjs)
sapply(	
	1:length(knobjs),
	function(k){
		assign(names(knobjs)[k], knobjs[[k]], envir = .GlobalEnv)
	}
)

theta <- knobjActMult1$datas[[1]]$thetas[1,]
thetaT <- knobjActMult1$transform_params(theta)

temp <- experiment_list1$delete_gene7(thetaT, knobjActMult1$global_parameters$initial_conditions)

rbind(temp$theta, thetaT)
rbind(temp$initial_conditions, knobjActMult1$global_parameters$initial_conditions)

pauwels2014 documentation built on May 29, 2017, 9:03 a.m.