simulate_experiment: Simulates the dynamics of a molecular perturbation
In pauwels2014: Bayesian Experimental Design for Systems Biology.

Description Usage Arguments Details Author(s) See Also Examples

This function simulates the kinetics of the system, in accordance with a chosen molecular perturbation.

1	simulate_experiment(theta, knobj, experiment_fun)

`theta`	A named numeric parameter vector
`knobj`	A knowledge list. See `knobjs`.
`experiment_fun`	An element of `experiment_list1` that represents a molecular perturbation

Transforms parameter values and initial conditions in order to pass it to deSolve ode solver.

Edouard Pauwels

transform_params, experiment_list1, simulate_experiment_no_transform

data(experiment_list1)

## Generate the knowledge object with correct parameter value
knobj <- generate_our_knowledge(transform_params)

temp <- simulate_experiment(knobj$global_parameters$true_params, 
 knobj, experiment_list1$nothing)

head(temp)