simulate_experiment_no_transform: Link to the ode solver.
In pauwels2014: Bayesian Experimental Design for Systems Biology.

Description Usage Arguments Details Value Author(s) Examples

View source: R/simulate_experiment_no_transform.R

Simulate the kinetics of the system using the ode solver of package deSolve.

1	simulate_experiment_no_transform(theta, initial_conditions, knobj)

`theta`	A parameter vector in physical space to be passed to the solver
`initial_conditions`	A vector of initial conditions to be passed to the solver
`knobj`	A knowledge list. See `knobjs`

The solver parameters are given by the global_parameters slot of knobj. The solver will call an executable which is defined in the src directory of the package under the name model0_simplified_mrna_rates. The number and order of parameters in theta and initial conditions in initial_conditions should correspond to the definition of the dynamical system as described in this file. See the vignette and manual of package deSolve.

A deSolve table with attributes.

Edouard Pauwels

## Generate the knowledge object with correct parameter value
knobj <- generate_our_knowledge(transform_params)

temp <- simulate_experiment_no_transform(knobj$global_parameters$true_params, 
 knobj$global_parameters$initial_conditions, knobj)

head(temp)