API for pbatR
Pedigree/Family-Based Genetic Association Tests Analysis and Power
| Global functions | |
|---|---|
| .onAttach | Source code |
| Xg | Source code |
| addCommandR | Source code |
| affectionPhe | Man page Source code |
| allPossibleSubsets | Source code |
| allelic_OR | Source code |
| as.cped | Man page Source code |
| as.ped | Man page Source code Source code |
| as.pedlist | Man page Source code |
| as.phe | Man page Source code Source code |
| as.pped | Man page Source code |
| c2bat | Man page Source code |
| calc_a | Source code |
| calc_ar | Source code |
| calc_or | Source code |
| calc_popPrev | Source code |
| catn | Source code |
| catt | Source code |
| catty | Source code |
| catwd | Source code |
| checkAndGetPbatdata | Source code |
| choicesEntry | Source code |
| choicesEntryEmpty | Source code |
| clearCommandsR | Source code |
| contsOffset | Source code |
| cped | Source code |
| createContsAscertainmentGUI | Source code |
| createDichotAscertainmentGUI | Source code |
| createPowerGUI | Source code |
| csPasteVector | Source code |
| dblGrid | Source code |
| debug_powerConversions | Source code |
| dfr | Source code |
| dfr.r | Source code |
| dir.by.date | Source code |
| errorIfAnyMatch | Source code |
| errorRangeCheck | Source code |
| errorVecNotContained | Source code |
| expandPath | Source code |
| extended.pbat.debug | Source code |
| extractTimeStamp | Source code |
| file.extension | Source code |
| file.strip.extension | Source code |
| fireUpdate | Source code |
| fireUpdateAF | Source code |
| fireUpdateAF_recalc | Source code |
| fireUpdateAOR | Source code |
| fireUpdateAOR_recalc | Source code |
| fireUpdateOR | Source code |
| fireUpdateOR_recalc | Source code |
| fireUpdatePen | Source code |
| fireUpdatePen_recalc | Source code |
| fireUpdatePower | Source code |
| fireUpdate_recalc_updatePens | Source code |
| fread.cped | Man page Source code |
| fread.ped | Man page Source code |
| fread.phe | Man page Source code |
| get.sym | Source code |
| getMOI | Source code |
| getPbatGUI | Source code |
| getPbatdata | Source code |
| getPbatlog | Source code |
| getPbatlogs | Source code |
| getPower | Source code |
| getPowerN | Source code |
| getPowerSafe | Source code |
| getPowerT | Source code |
| getPowerV | Source code |
| getPowerVSafe | Source code |
| getTimeStamp | Source code |
| getVersion | Source code |
| h_K | Source code |
| h_ar | Source code |
| h_model | Source code |
| h_or | Source code |
| h_orAllelic | Source code |
| is.cped | Man page Source code |
| is.finished | Man page Source code |
| is.ped | Man page Source code |
| is.pedlist | Man page Source code |
| is.phe | Man page Source code |
| is.pped | Man page Source code |
| is.sym | Source code |
| isPackageLoaded | Source code |
| isStringAllNumeric | Source code |
| isTimeStamped | Source code |
| isVecContained | Source code |
| isWindows | Source code |
| kludgeConvertAwfulR | Source code |
| kludgeConvertR | Source code |
| loadCurrentPbatLog | Source code |
| loadPbatlog | Source code |
| loadPbatlog.bad | Source code |
| loadPbatlog.slow.but.good | Source code |
| loadPbatlogConcatenate | Source code |
| loadPbatlogExtended | Source code |
| loadPbatlogExtended.slower | Source code |
| loadTclTkOrDie | Source code |
| newSlider | Source code |
| newframe | Source code |
| obfuscate | Man page Source code |
| pasteVector | Source code |
| pasteVector2 | Source code |
| pathFindFile | Source code |
| pathGet | Source code |
| pbat | Man page Source code Source code |
| pbat.clean | Man page Source code |
| pbat.concatenate | Man page Source code |
| pbat.create.commandfile | Man page Source code |
| pbat.current | Source code |
| pbat.files | Man page Source code |
| pbat.firsttime | Man page Source code |
| pbat.get | Man page Source code |
| pbat.get.fname | Source code |
| pbat.getNumProcesses | Source code |
| pbat.getmode | Man page Source code |
| pbat.getwine | Man page Source code |
| pbat.help | Man page Source code |
| pbat.last | Man page Source code |
| pbat.last.clear | Source code |
| pbat.last.rawResults | Man page Source code |
| pbat.load | Man page Source code |
| pbat.loadMetadata | Source code |
| pbat.logrank.replot | Source code |
| pbat.m | Man page Source code |
| pbat.obj | Man page Source code |
| pbat.power | Man page Source code |
| pbat.powerCmd | Man page Source code |
| pbat.set | Man page Source code |
| pbat.setVersionCheck | Man page Source code |
| pbat.setmode | Man page Source code |
| pbat.setmode.defaults | Man page Source code |
| pbat.setwine | Man page Source code |
| pbat.status | Man page Source code |
| pbat.unwork | Man page Source code |
| pbat.work | Man page Source code |
| pbat.writeMetadata | Source code |
| pbatFilesFixNamesExtra | Source code |
| pbatFilesFixNamesExtraSub | Source code |
| pbatGUI.compress | Source code |
| pbatGUI.debug | Source code |
| pbatGUI.ensureDataLoaded | Source code |
| pbatGUI.errorMessage | Source code |
| pbatGUI.group | Source code |
| pbatGUI.groupForm | Source code |
| pbatGUI.isRunning | Source code |
| pbatGUI.logrankForm | Source code |
| pbatGUI.mainForm | Source code |
| pbatGUI.options | Source code |
| pbatGUI.options1 | Source code |
| pbatGUI.options2 | Source code |
| pbatGUI.optionsForm | Source code |
| pbatGUI.pbatset | Source code |
| pbatGUI.pbatwineset | Source code |
| pbatGUI.pedFileChoice | Source code |
| pbatGUI.pheFileChoice | Source code |
| pbatGUI.phenotypes | Source code |
| pbatGUI.phenotypesForm | Source code |
| pbatGUI.populateList | Source code |
| pbatGUI.predictors | Source code |
| pbatGUI.predictorsForm | Source code |
| pbatGUI.setglobs | Source code |
| pbatGUI.snps | Source code |
| pbatGUI.snpsForm | Source code |
| pbatGUI.tkClearText | Source code |
| pbatGUI.tkSetText | Source code |
| pbatGUI.write | Source code |
| pbatenv.get | Source code |
| pbatenv.set | Source code |
| ped | Source code |
| pedMarkerNames | Man page Source code |
| pedlist | Source code |
| pen_allelicOR | Source code |
| pen_ar | Source code |
| pen_or1 | Source code |
| pen_or1_a | Source code |
| phe | Source code |
| plot.pbat | Man page Source code |
| plot.pedigree | Source code |
| plotCPed | Man page Source code |
| plotPed | Man page Source code |
| powerDisabled | Source code |
| powerGrid | Source code |
| print.cped | Source code |
| print.pbat | Man page Source code |
| print.ped | Source code |
| print.pedlist | Source code |
| print.phe | Source code |
| printFile | Source code |
| printFile2FileQuotesAppend | Source code |
| read.badheader | Source code |
| read.cped | Man page Source code |
| read.ped | Man page Source code |
| read.phe | Man page Source code |
| read.pped | Man page Source code |
| rem.dot.a | Source code |
| runCommandsR | Source code |
| set.sym | Source code |
| setPbatGUI | Source code |
| setPower | Source code |
| solve_allelicOR | Source code |
| solve_ar | Source code |
| solve_or1 | Source code |
| sort.cped | Man page Source code |
| sort.ped | Man page Source code |
| sort.phe | Man page Source code |
| sortResults | Source code |
| spaceInFilename | Source code |
| spaceInFilenameError | Source code |
| str.extract.after | Source code |
| str.extract.afterb | Source code |
| str.file.extension | Source code |
| str.getpath | Source code |
| strReplace | Source code |
| strfindb | Source code |
| strfindf | Source code |
| strlen | Source code |
| strsplitFix | Source code |
| strsplitFix2 | Source code |
| summary.pbat | Man page Source code |
| textMessageBox | Source code |
| textMessageBox2 | Source code |
| top | Man page Source code |
| vectorIntersection | Source code |
| vectorSubtraction | Source code |
| write.badheader | Source code |
| write.cped | Man page Source code |
| write.pbat | Man page Source code |
| write.pbat.csv | Man page Source code |
| write.ped | Man page Source code |
| write.phe | Man page Source code |
| writeCommand | Source code |
| writeCommandStrMatch | Source code |
| writeCommandStrMatch1 | Source code |
| writePbatstatus | Source code |
