RDA_plot: Plot RDA res

RDA_plotR Documentation

Plot RDA res

Description

Plot RDA res

Usage

RDA_plot(
  phy.rda,
  Group,
  metadata = NULL,
  Group2 = NULL,
  env_rate = 1,
  mode = 1,
  tri = FALSE,
  Topn = 10,
  rate = 1,
  margin = FALSE,
  box = TRUE,
  pal = NULL,
  sample_label = TRUE,
  stat_ellipse = TRUE,
  coord_fix = FALSE,
  bi_text_size = 3,
  env_text_param = NULL,
  ...
)

Arguments

phy.rda

rda/cca object

Group

group vector for color

metadata

metadata contain Group

Group2

mapping point shape

env_rate

default 1

mode

plot mode:1~3

tri

plot variables segments?

Topn

how many variables to show?

rate

segments length rate

margin

plot the margin boxplot?

box

margin plot box or density?

pal

colors for group

sample_label

plot the labels of samples?

stat_ellipse

plot the stat_ellipse?

coord_fix

fix the coordinates y/x ratio

bi_text_size

biplot text size

env_text_param

parameters pass to geom_text

...

add

Value

ggplot

See Also

myRDA


pctax documentation built on May 29, 2024, 10:03 a.m.