AutoFitPhenology: Automatic fit for phenology and tests

In phenology: Tools to Manage a Parametric Function that Describes Phenology and More

Automatic fit for phenology and tests

Description

This function is used to test several combinations of fit at a time.

Usage

AutoFitPhenology(
  data = stop("A dataset must be provided"),
  progressbar = TRUE,
  ...
)

Arguments

data	Dataset generated with add_phenology()
progressbar	If FALSE, do not show the progress bar
...	Parameters for fit_phenology()

Details

AutoFitPhenology runs fit for phenology and tests several combinations

Value

A list with 12 elements corresponding to the 12 tested models

Author(s)

Marc Girondot

See Also

Other Phenology model: BE_to_LBLE(), Gratiot, LBLE_to_BE(), LBLE_to_L(), L_to_LBLE(), MarineTurtles_2002, MinBMinE_to_Min(), adapt_parameters(), add_SE(), add_phenology(), extract_result(), fit_phenology(), likelihood_phenology(), logLik.phenology(), map_Gratiot, map_phenology(), par_init(), phenology(), phenology2fitRMU(), phenology_MHmcmc(), phenology_MHmcmc_p(), plot.phenology(), plot.phenologymap(), plot_delta(), plot_phi(), print.phenology(), print.phenologymap(), print.phenologyout(), remove_site(), result_Gratiot, result_Gratiot1, result_Gratiot2, result_Gratiot_Flat, result_Gratiot_mcmc, summary.phenology(), summary.phenologymap(), summary.phenologyout()

Examples

## Not run: 
library(phenology)
# Read a file with data
data(Gratiot)
# Generate a formatted list nammed data_Gratiot 
data_Gratiot <- add_phenology(Gratiot, name="Complete", 
		reference=as.Date("2001-01-01"), format="%d/%m/%Y")
# Run the optimisation
result_Gratiot_Auto <- AutoFitPhenology(data=data_Gratiot)
result_Gratiot_Auto <- AutoFitPhenology(data=data_Gratiot, 
          control=list(trace=0, REPORT=100, maxit=500))

## End(Not run)

phenology documentation built on Sept. 11, 2024, 6:07 p.m.