AutoFitPhenology: Automatic fit for phenology and tests

Description Usage Arguments Details Value Author(s) See Also Examples

View source: R/AutoFitPhenology.R

Description

This function is used to test several combinations of fit at a time.

Usage

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AutoFitPhenology(
  data = stop("A dataset must be provided"),
  progressbar = TRUE,
  ...
)

Arguments

data

Dataset generated with add_phenology()

progressbar

If FALSE, do not show the progress bar

...

Parameters for fit_phenology()

Details

AutoFitPhenology runs fit for phenology and tests several combinations

Value

A list with 12 elements corresponding to the 12 tested models

Author(s)

Marc Girondot

See Also

Other Phenology model: BE_to_LBLE(), Gratiot, LBLE_to_BE(), LBLE_to_L(), L_to_LBLE(), MarineTurtles_2002, MinBMinE_to_Min(), adapt_parameters(), add_SE(), add_phenology(), extract_result(), fit_phenology(), likelihood_phenology(), logLik.phenology(), map_Gratiot, map_phenology(), par_init(), phenology2fitRMU(), phenology_MHmcmc_p(), phenology_MHmcmc(), phenology(), plot.phenologymap(), plot.phenology(), plot_delta(), plot_phi(), print.phenologymap(), print.phenologyout(), print.phenology(), remove_site(), result_Gratiot1, result_Gratiot2, result_Gratiot_Flat, result_Gratiot_mcmc, result_Gratiot, summary.phenologymap(), summary.phenologyout(), summary.phenology()

Examples

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## Not run: 
library(phenology)
# Read a file with data
data(Gratiot)
# Generate a formatted list nammed data_Gratiot 
data_Gratiot <- add_phenology(Gratiot, name="Complete", 
		reference=as.Date("2001-01-01"), format="%d/%m/%Y")
# Run the optimisation
result_Gratiot_Auto <- AutoFitPhenology(data=data_Gratiot)
result_Gratiot_Auto <- AutoFitPhenology(data=data_Gratiot, 
          control=list(trace=0, REPORT=100, maxit=500))

## End(Not run)

phenology documentation built on Oct. 23, 2020, 7:22 p.m.