# ECFOCF_f: Calculate a table of probabilities of ECF and OCF. In phenology: Tools to Manage a Parametric Function that Describes Phenology and More

 ECFOCF_f R Documentation

## Calculate a table of probabilities of ECF and OCF.

### Description

This function calculates a table of probabilities of ECF and OCF.
If p is lower or higher than 1E-100 or 1-1E-100, it is changed to 1E-100 and 1-(1E-100) respectively.
Names for p vector elements should be p, or px (with x=1:categories), or px.period.
If mu_season and sd_season are equal to NA, the model is not temporalized.
If mu_season and sd_season are not NA, the model returns a 3D-table OCFECF.

### Usage

``````ECFOCF_f(
mu,
sd = NA,
p,
MaxNests = 15,
mu_season = NA,
sd_season = NA,
MeanDaysBetween2Nests = 9.8,
length_season = floor(365/MeanDaysBetween2Nests) + 1,
parallel = TRUE
)
``````

### Arguments

 `mu` The average of lognormal for clutch frequency. `sd` The sd parameter of lognormal for clutch frequency. `p` The capture probability for an individual nesting event. As a probability. `MaxNests` Maximum number of nests by a female. `mu_season` The average of ordinal day for beginning of nesting season. `sd_season` The sd parameter of lognormal for ordinal day for beginning of nesting season. `MeanDaysBetween2Nests` Average number of days between two nests. `length_season` The total length of season based on groups of interclutch intervals. `parallel` If TRUE parallel computing is used.

### Details

ECFOCF_f calculate a table of probabilities of ECF and OCF.

### Value

Return a matrix of class TableECFOCF.

### Author(s)

Marc Girondot marc.girondot@gmail.com

Other Model of Clutch Frequency: `ECFOCF_full()`, `TableECFOCF()`, `fitCF_MHmcmc_p()`, `fitCF_MHmcmc()`, `fitCF()`, `generateCF()`, `lnLCF()`, `logLik.ECFOCF()`, `plot.ECFOCF()`, `plot.TableECFOCF()`

### Examples

``````## Not run:
library(phenology)
# Example
modelECFOCF <- ECFOCF_f(mu=5.58013243236187,
sd=1.225581130238,
p=invlogit(1.3578137414575),
MaxNests=15)
plot(modelECFOCF)
modelECFOCF <- ECFOCF_f(mu=5.58013243236187,
sd=1.225581130238,
mu_season=12,
sd_season=2,
p=c(p1=invlogit(1.3578137414575)),
MaxNests=15,
MeanDaysBetween2Nests=9.8,
length_season=floor(365/9.8)+1)
plot(modelECFOCF, period=2)

## End(Not run)
``````

phenology documentation built on Oct. 16, 2023, 9:06 a.m.