extract_result: Extract the set of parameters from a result object.

Description Usage Arguments Details Value Author(s) See Also Examples

View source: R/extract_result.R

Description

The function "extract_result" permits to extract the set of parameters from a result object obtained after fit_phenology.

Usage

1
extract_result(result = NULL)

Arguments

result

A result file

Details

extract_result get the fitted parameters from a result object.

Value

Return the set of fitted parameters

Author(s)

Marc Girondot

See Also

Other Phenology model: AutoFitPhenology(), BE_to_LBLE(), Gratiot, LBLE_to_BE(), LBLE_to_L(), L_to_LBLE(), MarineTurtles_2002, MinBMinE_to_Min(), adapt_parameters(), add_SE(), add_phenology(), fit_phenology(), likelihood_phenology(), logLik.phenology(), map_Gratiot, map_phenology(), par_init(), phenology2fitRMU(), phenology_MHmcmc_p(), phenology_MHmcmc(), phenology(), plot.phenologymap(), plot.phenology(), plot_delta(), plot_phi(), print.phenologymap(), print.phenologyout(), print.phenology(), remove_site(), result_Gratiot1, result_Gratiot2, result_Gratiot_Flat, result_Gratiot_mcmc, result_Gratiot, summary.phenologymap(), summary.phenologyout(), summary.phenology()

Examples

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
13
14
15
16
17
library(phenology)
## Not run: 
# Read a file with data
data(Gratiot)
# Generate a formatted list nammed data_Gratiot 
data_Gratiot<-add_phenology(Gratiot, name="Complete", 
		reference=as.Date("2001-01-01"), format="%d/%m/%Y")
# Generate initial points for the optimisation
parg<-par_init(data_Gratiot, fixed.parameters=NULL)
# Run the optimisation
# result_Gratiot<-fit_phenology(data=data_Gratiot, fitted.parameters=parg, 
		fixed.parameters=NULL)
data(result_Gratiot)
# Extract the fitted parameters
parg1<-extract_result(result_Gratiot)

## End(Not run)

phenology documentation built on Oct. 23, 2020, 7:22 p.m.