plotOneTree: Plot a phylo4 object
In phylobase: Base Package for Phylogenetic Structures and Comparative Data

plotOneTree

R Documentation

Plot a phylo4 object

Description

Plots the phylogenetic tree contained in a phylo4 or phylo4d object.

Usage

plotOneTree(
  xxyy,
  type,
  show.tip.label,
  show.node.label,
  edge.color,
  node.color,
  tip.color,
  edge.width,
  rot
)

Arguments

`xxyy`	A list created by the `phyloXXYY` function
`type`	A character string indicating the shape of plotted tree
`show.tip.label`	Logical, indicating whether tip labels should be shown
`show.node.label`	Logical, indicating whether node labels should be shown
`edge.color`	A vector of colors in the order of `edges(phy)`
`node.color`	A vector of colors indicating the colors of the node labels
`tip.color`	A vector of colors indicating the colors of the tip labels
`edge.width`	A vector in the order of `edges(phy)` indicating the widths of edge lines
`rot`	Numeric indicating the rotation of the plot in degrees

Value

Returns no values, function invoked for the plotting side effect.

Author(s)

Peter Cowan pdc@berkeley.edu

Examples

library(grid)
data(geospiza)
grid.newpage()
xxyy <- phyloXXYY(geospiza)
plotOneTree(xxyy, type = 'phylogram',
  show.tip.label = TRUE, show.node.label = TRUE,
  edge.color = 'black', node.color = 'orange', tip.color = 'blue',
  edge.width = 1, rot = 0
)

grid.newpage()
pushViewport(viewport(w = 0.8, h = 0.8))
plotOneTree(xxyy, type = 'phylogram',
  show.tip.label = TRUE, show.node.label = TRUE,
  edge.color = 'black', node.color = 'orange', tip.color = 'blue',
  edge.width = 1, rot = 0
)
popViewport()

phylobase documentation built on May 29, 2024, 11:24 a.m.