Files in phylobase
Base Package for Phylogenetic Structures and Comparative Data

inst
inst/nexmlfiles
inst/nexmlfiles/comp_analysis.xml
inst/nexusfiles
inst/nexusfiles/treeWithPolyExcludedData.nex
inst/nexusfiles/MultiLineTrees.nex
inst/nexusfiles/NastyLabels2.nex
inst/nexusfiles/NastyLabels.nex
inst/nexusfiles/minNex.nex
inst/nexusfiles/co1.nex
inst/nexusfiles/noStateLabels.nex
inst/nexusfiles/treeWithDiscreteData.nex
inst/nexusfiles/shorebird_underscore.nex
inst/nexusfiles/treeWithUnderscoreLabels.nex
inst/nexusfiles/testSubsetTaxa.nex
inst/nexusfiles/treeWithContinuousData.nex
inst/nexusfiles/minSeq.nex
inst/nexusfiles/test_min.nex
inst/nexusfiles/treeWithSpecialCharacters.nex
inst/nexusfiles/newick.tre
inst/nexusfiles/treeWithDiscAndContData.nex
inst/nexusfiles/treeRoundingError.nex
inst/nexusfiles/ExContData.Rdata
inst/doc
inst/doc/phylobase.Rnw
inst/doc/phylobase.pdf
tests
tests/testprune.R tests/phylo4dtests.R tests/phylosubtest.R tests/phylotorture.R tests/plottest.R tests/roundtrip.R tests/misctests.R
tests/testthat
tests/testthat/test.badnex.R tests/testthat/test.phylobase.options.R tests/testthat/test.class-phylo4d.R tests/testthat/test.formatData.R tests/testthat/test.readNCL.R tests/testthat/test.tbind.R tests/testthat/test.methods-oldclasses.R tests/testthat/test.treePlot.R tests/testthat/test.treewalk.R tests/testthat/test.checkdata.R tests/testthat/test.treestruc.R tests/testthat/test.phylo4.R tests/testthat/test.subset.R tests/testthat/test.class-phylo4.R tests/testthat/test.pdata.R tests/testthat/test.methods-phylo4.R tests/testthat/test.setAs-Methods.R tests/testthat/test.prune.R tests/test-all.R
src
src/Makevars
src/phylobase_init.c
src/checkPhylo4.cpp
src/reorderRobust.c
src/phyloXX.c
src/descendants.c
src/ancestors.c
src/reorderBinary.c
src/Makevars.win
src/RcppExports.cpp
NAMESPACE
NEWS.md
data
data/geospiza_raw.rda
data/owls4.rda
data/geospiza.rda
R
R/oldclasses-class.R R/readNCL.R R/getNode-methods.R R/tdata-methods.R R/nodeId-methods.R R/pdata.R R/phylo4-class.R R/summary-methods.R R/phylo4d-accessors.R R/phylomats-class.R R/edgeLength-methods.R R/labels-methods.R R/shortestPath-methods.R R/extractTree.R R/checkdata.R R/print-methods.R R/RcppExports.R R/phylo4d-class.R R/reorder-methods.R R/phylo4-methods.R R/multiphylo4-class.R R/setAs-methods.R R/addData-methods.R R/MRCA-methods.R R/ancestors.R R/phylo4-accessors.R R/formatData.R R/treePlot.R R/phylo4d-methods.R R/tbind.R R/phylobase.options.R R/subset-methods.R R/root-methods.R R/zzz.R R/phylobase-package.R R/treestruc.R R/internal-constructors.R
vignettes
vignettes/phylobase.Rnw
vignettes/auto
vignettes/auto/phylobase.el
vignettes/auto/developer.el
MD5
build
build/vignette.rds
DESCRIPTION
man
man/treeStructure-methods.Rd man/summary-methods.Rd man/root-methods.Rd man/phylo4-methods.Rd man/edges-accessors.Rd man/addData-methods.Rd man/owls4.Rd man/tdata-methods.Rd man/shortestPath-methods.Rd man/MRCA.Rd man/extractTree.Rd man/geospiza.Rd man/phylomat-class.Rd man/tip.data.plot.Rd man/phylobubbles.Rd man/setAs-methods.Rd man/plotOneTree.Rd man/subset-methods.Rd man/phylo4d-class.Rd man/nodeId-methods.Rd man/phylo4d-accessors.Rd man/multiPhylo-class.Rd man/edgeLength-methods.Rd man/phylo4d-methods.Rd man/pdata.Rd man/reorder-methods.Rd man/getNode-methods.Rd man/phylobase.options.Rd man/formatData.Rd man/readNexus.Rd man/treePlot-methods.Rd man/pdata-class.Rd man/labels-methods.Rd man/phyloXXYY.Rd man/print-methods.Rd man/ancestors.Rd man/nTips-methods.Rd man/checkPhylo4.Rd man/phylobase-package.Rd man/phylo4-class.Rd
phylobase documentation built on May 30, 2017, 4:15 a.m.