shortestPath-methods: shortestPath-methods

In phylobase: Base Package for Phylogenetic Structures and Comparative Data

shortestPath-methods

Description

Finds the shortest path between two nodes in a tree

Usage

shortestPath(x, node1, node2)

## S4 method for signature 'phylo4'
shortestPath(x, node1, node2)

## S4 method for signature 'phylo'
shortestPath(x, node1, node2)

Arguments

x	a tree in the phylo4, phylo4d or phylo format
node1	a numeric or character (passed to getNode) indicating the beginning from which the path should be calculated.
node2	a numeric or character (passed to getNode) indicating the end of the path.

Details

Given two nodes (i.e, tips or internal nodes), this function returns the shortest path between them (excluding node1 and node2 as a vector of nodes.

Value

a vector of nodes indcating the shortest path between 2 nodes

See Also

getNode

phylobase documentation built on May 29, 2024, 11:24 a.m.