tip.data.plot: Plotting trees and associated data

In phylobase: Base Package for Phylogenetic Structures and Comparative Data

Plotting trees and associated data

Description

Plotting phylogenetic trees and associated data

Usage

tip.data.plot(
  xxyy,
  type = c("phylogram", "cladogram", "fan"),
  show.tip.label = TRUE,
  show.node.label = FALSE,
  rot = 0,
  tip.plot.fun = grid.points,
  edge.color = "black",
  node.color = "black",
  tip.color = "black",
  edge.width = 1,
  ...
)

Arguments

xxyy	A list created by the phyloXXYY function
type	A character string indicating the shape of plotted tree
show.tip.label	Logical, indicating whether tip labels should be shown
show.node.label	Logical, indicating whether node labels should be shown
rot	Numeric indicating the rotation of the plot in degrees
tip.plot.fun	A function used to plot the data elements of a phylo4d object
edge.color	A vector of colors in the order of edges(phy)
node.color	A vector of colors indicating the colors of the node labels
tip.color	A vector of colors indicating the colors of the tip labels
edge.width	A vector in the order of edges(phy) indicating the widths of edge lines
...	Additional parameters passed to tip.plot.fun

Value

creates a plot on the current graphics device.

Author(s)

Peter Cowan

phylobase documentation built on May 29, 2024, 11:24 a.m.