The package provides functions for fitting phylogenetic linear models and phylogenetic generalized linear models. Computations use an algorithm that is linear in the number of tips in the tree. The package also provides functions for simulating continuous or binary traits along the tree. When a new version is stable, it is pushed to CRAN, so the version available here is newer than that on CRAN.
Lam Si Tung Ho and Cécile Ané (2014). Intrinsic inference difficulties for trait evolution with Ornstein-Uhlenbeck models. Methods in Ecology and Evolution 5(11):1133-1146. (link)
Lam Si Tung Ho and Cécile Ané (2014). A linear-time algorithm for Gaussian and non-Gaussian trait evolution models. Systematic Biology 63(3):397-408. (link to pdf)
Install phylolm
from github
:
devtools::install_github("lamho86/phylolm")
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