guidetree: Binary population tree within Arabidopsis thaliana
In phylolm: Phylogenetic Linear Regression
Description
Usage
Format
References
Description
Binary population tree for
29 A. thaliana accessions and A. lyrata,
obtained from chromosome 4 using MDL to delimit loci,
BUCKy to estimate quartet concordance factors (CFs) and
Quartet Max Cut to estimate the tree topology.
Usage
1
Format
tree object of class phylo. Branch lengths are in coalescent units.
References
Stenz, Noah W. M., Bret Larget, David A. Baum and Cécile Ané (2015).
Exploring tree-like and non-tree-like patterns using genome sequences:
An example using the inbreeding plant species Arabidopsis thaliana (L.) Heynh.
Systematic Biology, 64(5):809-823.
TICR pipeline: github.com/nstenz/TICR
phylolm documentation built on July 2, 2020, 3:44 a.m.
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Description Usage Format References
Description
Binary population tree for 29 A. thaliana accessions and A. lyrata, obtained from chromosome 4 using MDL to delimit loci, BUCKy to estimate quartet concordance factors (CFs) and Quartet Max Cut to estimate the tree topology.
Usage
1 |
Format
tree object of class phylo. Branch lengths are in coalescent units.
References
Stenz, Noah W. M., Bret Larget, David A. Baum and Cécile Ané (2015). Exploring tree-like and non-tree-like patterns using genome sequences: An example using the inbreeding plant species Arabidopsis thaliana (L.) Heynh. Systematic Biology, 64(5):809-823.
TICR pipeline: github.com/nstenz/TICR
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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